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java.lang.Object | +--pal.distance.DistanceMatrix | +--pal.distance.SUPGMADistanceMatrix
Corrects distances in a distance matrix such that all tips appear contemporaneous, given a time/date and rate information for the taxa.
Fields inherited from class pal.distance.DistanceMatrix |
distance, idGroup, numSeqs |
Constructor Summary | |
SUPGMADistanceMatrix(DistanceMatrix raw,
TimeOrderCharacterData tocd,
double rate)
Uses date/time information and a constant rate to correct distance matrices. |
Methods inherited from class pal.distance.DistanceMatrix |
absoluteDistance, addDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setIdentifier, squaredDistance, toString, whichIdNumber |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public SUPGMADistanceMatrix(DistanceMatrix raw, TimeOrderCharacterData tocd, double rate)
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