pal.distance
Class ReadDistanceMatrix

java.lang.Object
  |
  +--pal.distance.DistanceMatrix
        |
        +--pal.distance.ReadDistanceMatrix
All Implemented Interfaces:
IdGroup, java.io.Serializable

public class ReadDistanceMatrix
extends DistanceMatrix

reads pairwise distance matrices in PHYLIP format (full matrix)

See Also:
Serialized Form

Fields inherited from class pal.distance.DistanceMatrix
distance, idGroup, numSeqs
 
Constructor Summary
ReadDistanceMatrix(java.io.PushbackReader input)
          read from stream
ReadDistanceMatrix(java.lang.String file)
          read from file
 
Methods inherited from class pal.distance.DistanceMatrix
absoluteDistance, addDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setIdentifier, squaredDistance, toString, whichIdNumber
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

ReadDistanceMatrix

public ReadDistanceMatrix(java.io.PushbackReader input)
                   throws DistanceParseException
read from stream

ReadDistanceMatrix

public ReadDistanceMatrix(java.lang.String file)
                   throws DistanceParseException,
                          java.io.IOException
read from file