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java.lang.Object | +--java.awt.Component | +--pal.gui.LinkageDisequilibriumComponent
An AWT Component for displaying information on linkage disequilibrium. Nice schematics are produced if an annotation alignment is used to construct LinkageDisequilibrium. It can portray things both on the gene and chromosomal scale.
Inner classes inherited from class java.awt.Component |
java.awt.Component.AccessibleAWTComponent |
Field Summary | |
static int |
DPRIME
|
static int |
P_VALUE
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static int |
RSQUARE
|
Fields inherited from class java.awt.Component |
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT |
Fields inherited from interface java.awt.print.Printable |
NO_SUCH_PAGE, PAGE_EXISTS |
Fields inherited from interface java.awt.image.ImageObserver |
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Constructor Summary | |
LinkageDisequilibriumComponent(LinkageDisequilibrium theLD,
boolean includeBlockSchematic,
boolean chromosomalScale)
|
Method Summary | |
void |
paint(java.awt.Graphics g)
|
protected void |
paintComponent(java.awt.Graphics g)
|
int |
print(java.awt.Graphics g,
java.awt.print.PageFormat pf,
int pageIndex)
|
void |
setLowerCorner(int ldMeasure)
This determines what is displayed in the lower left corner. |
void |
setScaleOfView(boolean chromosomalScale)
This sets the scale of the LD view, either sites are organized by chromosomes if chromosomalScale is true, otherwise they are organized by genes |
void |
setShowSchematic(boolean includeBlockSchematic)
This sets whether a schematic is displayed. |
void |
setUpperCorner(int ldMeasure)
This determines what is displayed in the upper right corner. |
Methods inherited from class java.awt.Component |
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, deliverEvent, disable, disableEvents, dispatchEvent, doLayout, enable, enable, enableEvents, enableInputMethods, firePropertyChange, getAccessibleContext, getAlignmentX, getAlignmentY, getBackground, getBounds, getBounds, getColorModel, getComponentAt, getComponentAt, getComponentOrientation, getCursor, getDropTarget, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getInputContext, getInputMethodRequests, getListeners, getLocale, getLocation, getLocation, getLocationOnScreen, getMaximumSize, getMinimumSize, getName, getParent, getPeer, getPreferredSize, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, invalidate, isDisplayable, isDoubleBuffered, isEnabled, isFocusTraversable, isLightweight, isOpaque, isShowing, isValid, isVisible, keyDown, keyUp, layout, list, list, list, list, list, locate, location, lostFocus, minimumSize, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, paramString, postEvent, preferredSize, prepareImage, prepareImage, print, printAll, processComponentEvent, processEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFont, setForeground, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, show, size, toString, transferFocus, update, validate |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
public static final int P_VALUE
public static final int DPRIME
public static final int RSQUARE
Constructor Detail |
public LinkageDisequilibriumComponent(LinkageDisequilibrium theLD, boolean includeBlockSchematic, boolean chromosomalScale)
Method Detail |
public void setLowerCorner(int ldMeasure)
public void setUpperCorner(int ldMeasure)
public void setScaleOfView(boolean chromosomalScale)
public void setShowSchematic(boolean includeBlockSchematic)
protected void paintComponent(java.awt.Graphics g)
public void paint(java.awt.Graphics g)
paint
in class java.awt.Component
public int print(java.awt.Graphics g, java.awt.print.PageFormat pf, int pageIndex)
print
in interface java.awt.print.Printable
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