pal.substmodel
Interfaces 
AminoAcidModelID
NucleotideModelID
RateMatrix
SubstitutionModel
Classes 
AbstractRateMatrix
AminoAcidModel
BLOSUM62
CachedRateMatrix
CodonModel
CPREV
Dayhoff
F81
F84
GammaRates
GTR
HKY
InvariableSites
JTT
MatrixExponential
MTREV24
NucleotideModel
RateDistribution
RateMatrixUtils
SimpleSubstitutionModel
TN
TwoStateModel
UniformRate
VT
WAG
YangCodonModel